Curriculum
From SC Education
Curriculum Module Development
N.B. This is a work in progress, when a particular module is ready it will be posted in the "production" location
Pointers to on-line curriculum modules (BCCD list-packages and other repositories):
- Computational Biology
- Introduction to DNA - (The place to start for the biological background useful for all of these tools) - http://bccd.cs.uni.edu/mediawiki/index.php/Introduction_to_DNA
- Proteins and Folding - (The next place to go) - http://bccd.cs.uni.edu/mediawiki/index.php/Proteins_and_Folding
- Gromacs
- About mpiBLAST - http://bccd.cs.uni.edu/mediawiki/index.php/About_mpiBLAST
- Running mpiBLAST - http://bccd.cs.uni.edu/mediawiki/index.php/Running_mpiBLAST
- Bioinformatics/Computational Biology
- PaCE (and cap3)
- On-line materials we have used
- Henry Neeman's Supercomputing in Plain English - http://www.oscer.ou.edu/education.php
- TACC courses
- Computational Chemistry
- Background and Overview of Molecular Modeling (Presentation) - http://www.shodor.org/sc07/molecular%20modeling%20intro.pdf
- WebMO Directions - http://www.shodor.org/sc07/molecular%20modeling%20with%20C-C.pdf
- Chemical Kinetics Using Vensim PLE - http://www.computationalscience.org/ccce/Lesson10/vensim_study.pdf
- Desktop-to-Grid (Presentation) - http://www.shodor.org/sc07/Desktop-to-Grid.pdf
- Exercises & Examples - http://www.shodor.org/sc07/SC07%20Desktop-to-Grid%20Exercises.pdf
- Background and Overview of Molecular Modeling (Presentation) - http://www.shodor.org/sc07/molecular%20modeling%20intro.pdf
- GIS/GPS/Map Mashups
- Parallel and Distributed Programming
- Metaverses
- Computational Environmental Science
- Predator/Prey agent modeling with Netlogo
- Plume modeling (Shodor/CSERD)
- Visualization
- Pointers to CSERD modules we use:
- Pointers to Interactivate modules we use:
- Notes, lists, ideas, etc.
